Sharpe, bunyamin taran, rong li, benjamin deonovic, connor cameron, andrew d. All structured data from the file and property namespaces is available under the. Genomewide analysis of the aquaporin gene family in chickpea. Data source and references for cicer arietinum chick pea from the usda plants database. The current release of database provides transcriptome sequence from cultivated cicer arietinum desi icc4958 and kabuli iccv2 and wild. The record derives from ildis which reports it as an accepted name record 4318. The refseq genome records for cicer arietinum were annotated by the ncbi eukaryotic genome annotation pipeline, an automated pipeline that annotates.
The website also provides access to a database and images of plants photos and herbarium specimens found at participating herbaria. The name of the release, important dates, the software version. Comprehensive transcriptome assembly of chickpea cicer arietinum l. A lectin isolated from the seed of the chick pea, cicer arietinum, agglutinates papain treated human erythrocytes strongly. Delicious in soups and stews or perfect for making your own hummus. The refseq genome records for cicer arietinum were annotated by the ncbi. Draft genome sequence of chickpea cicer arietinum provides a resource for trait improvement. Cicer arietinum icc4958, clustering, comparative genomics, genome browser, mapping background the draft genome sequence of the economically important pulse crop cicer arietinum l.
Genomewide identification of the auxin response factor. Using sanger and next generation sequencing platforms. An advanced draft genome assembly of a desi type chickpea. The rcsb pdb also provides a variety of tools and resources.
Genomewide identification and expression analysis of the vq. As a member of the wwpdb, the rcsb pdb curates and annotates pdb data according to agreed upon standards. This page was last edited on 12 november 2017, at 07. The data were searched against ncbi cicer arietinum proteome database updated december 12, 2012, containing 33,000 protein sequences. An cicer arietinum in nahilalakip ha genus nga cicer, ngan familia nga fabaceae. However, vq genes have not been comprehensively evaluated in c. Pdf molecular analysis of chickpea cicer arietinum l. In this study, we identified 19 and 32 vq genes in c. Chickpea plants can be described as stems are branched, erect or spreading, sometimes. Data source and references for cicer arietinum chick pea. Cicer arietinum and medicago truncatula are common legumes and model plants that have been used to study legume genomics wang et al.
Chickpea cicer arietinum is one of the worlds three most consumed pulses the other two are phaseolus vulgaris and pisum sativum. For computation of chains of syntenic regions, dagchainer software. Chickpea plants can be described as stems are branched, erect or spreading, sometimes shrubby much branched, 0. Chickpeas, or garbanzo beans, are an old word legume that was introduced to the southwest by the spanish. The increasing number of legume genome sequences also presents a challenge for developing reliable and informationdriven bioinformatics applications suitable for. Chickpea cicer arietinum is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food. Crystal structure of a plant albumin from cicer arietinum showing hemagglutination. The draft genome sequence of the economically important pulse crop cicer arietinum l. Datenblatt bei international legume database information service ildis. Most of these processes are initiated or mediated through auxinregulated gene expression, which in turn is controlled by proteins belonging three gene families.
The emergence of epidemic fungal pathogenic resistance to current antifungal drugs has increased the interest in developing alternative antibiotics from natural sources. Users can select the specific blast program and database. Cicer arietinum annotation report national center for. The record derives from ildis which reports it as an. Pdf comprehensive functional analysis and mapping of ssr. Genomewide identification and expression analysis of the. Chickpea was domesticated in the fertile crescent of the middle east, together with other pulses as well as wheat and barley. The refseq genome records for cicer arietinum were annotated by the ncbi eukaryotic genome annotation pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. Its different types are variously known as gram or bengal gram, garbanzo or garbanzo bean, egyptian pea, chana, and chole. The species is hermaphrodite has both male and female organs. Its cultivation is of particular importance to food security in the developing world. If you use one of these buttons, you may have to use your browsers back button to return to this page. Valineglutamine vq proteins are plantspecific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. We constructed cicertransdb cicer transcription factor database.
The staple crop chickpea cicer arietinum 2n 2x 16 is the worlds second most widely grown legume. Untreated cells react weakly, and only in the presence of high. We developed an integrated chickpea transcriptome database ctdb. All structured data from the file and property namespaces is available under the creative commons cc0 license. The chickpea transcriptome database ctdb has been developed with the view to provide most comprehensive information about the chickpea transcriptome, the most relevant part of the genome. Network grin, usda, ars, national genetic resources program. Chickpea was domesticated in the fertile crescent of the. Most of these processes are initiated or mediated through auxin. Apr 27, 2018 the plant hormone auxin indole3acetic acid is a key regulator of virtually every aspect of plant growth and development. Antifungal and antiproliferative protein from cicer arietinum. Files are available under licenses specified on their description page. The current release of database provides transcriptome sequence from cultivated cicer arietinum desi icc4958 and kabuli iccv2 and wild cicer reticulatum, pi489777 chickpea genotypes.
The annotation products are available in the sequence databases and on the ftp. In this study, a comprehensive genomewide analysis. The plant hormone auxin indole3acetic acid is a key regulator of virtually every aspect of plant growth and development. The chickpea cicer arietinum is a legume species in the group of. Its cultivation is of particular importance to food security in the developing world where. Untreated cells react weakly, and only in the presence of high concentrations of bsa. Chickpea cicer arietinum is a widely grown legume crop in tropical, subtropical.
Genomewide analysis and expression profiling of the solanum tuberosum aquaporins. Molecular analysis of chickpea cicer arietinum l cultivars using aflp and stms markers article pdf available in journal of plant biochemistry and biotechnology 172. Cicer arietinum synonyms, cicer arietinum antonyms. Some lectins having hemagglutination activity were isolated earlier from cicer arietinum. We previously reported a draft genome assembly of the desi chickpea cultivar icc 4958. It is in flower from june to july, and the seeds ripen from august to september. The first group includes the cultivated chickpea cicer arietinum l. It has been reported that the use of cicer arietinum helps in diabetes and cardiovascular diseases and in some cancers. Jan 27, 20 the staple crop chickpea cicer arietinum 2n 2x 16 is the worlds second most widely grown legume.
Cicer arietinum is not known as a wild plant but is believed to have originated in the central part of the fertile crescent in modern turkey, syria and iran. However, drought poses a serious threat to chickpea production, and development of drought. Aquaporins aqps are essential membrane proteins that play critical role in the transport of water and many other solutes across cell membranes. However, drought poses a serious threat to chickpea production, and development of droughtresistant varieties is a necessity. General information about cicer arietinum ciear eppo global database. Dec 18, 2014 availability of the draft nuclear genome sequences of smallseeded desitype legume crop cicer arietinum has provided an opportunity for investigating unique chickpea genomic features and evaluation of their biological significance. Article pdf available in computational biology and chemistry 84. Antifungal and antiproliferative protein from cicer. The alabama plant atlas is a source of data for the distribution of plants within the state as well as taxonomic, conservation, invasive, and wetland information for each species.
Unfortunately, cultivated chickpea has a high morphological but narrow genetic diversity, and understanding the genetic processes of this plant is hindered by the fact that the chickpea. Mass spectrometry data were processed to generate peak list files using proteome discoverer software version 2. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. The following databases on web pages not maintained by ildis may contain information on cicer arietinum. Chickpea cicer arietinum, is an important legume crop in the semiarid tropics and ranks third in total yield among seed legume crops globally, after soybean and common bean. This initiative was undertaken by our group for the. Genomewide identification and expression analysis of two. Full publication details for this name can be found in ipni. It is believed to be derived from the the wild species c. Comprehensive functional analysis and mapping of ssr markers in the chickpea genome cicer arietinum l. Genomewide analysis of the aquaporin gene family in. Its different types are variously known as gram or bengal gram, garbanzo or garbanzo. General information about cicer 1cieg this website uses cookies our website uses cookies to ensure that we give you the best possible online experience. Genomewide identification and expression analysis of two component system genes in cicer arietinum author links open overlay panel bilal ahmad a 1 farrukh azeem a 1 muhammad amjad ali b c.
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